{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Hazard indicator intro"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 47,
   "metadata": {},
   "outputs": [],
   "source": [
    "from dotenv import load_dotenv\n",
    "from affine import Affine\n",
    "import os\n",
    "import numpy as np\n",
    "import pathlib\n",
    "from pathlib import PurePosixPath\n",
    "from pyproj import Transformer\n",
    "import s3fs\n",
    "import zarr\n",
    "\n",
    "# load bucket credentials as environment variables\n",
    "dotenv_dir = os.environ.get(\"CREDENTIAL_DOTENV_DIR\", os.getcwd())\n",
    "dotenv_path = pathlib.Path(dotenv_dir) / \"credentials.env\"\n",
    "if os.path.exists(dotenv_path):\n",
    "    load_dotenv(dotenv_path=dotenv_path, override=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 61,
   "metadata": {},
   "outputs": [],
   "source": [
    "import s3fs\n",
    "\n",
    "bucket = os.environ.get(\"OSC_S3_BUCKET_DEV\")\n",
    "s3 = s3fs.S3FileSystem(\n",
    "    key=os.environ.get(\"OSC_S3_ACCESS_KEY_DEV\", None),\n",
    "    secret=os.environ.get(\"OSC_S3_SECRET_KEY_DEV\", None),\n",
    ")\n",
    "\n",
    "group_path = str(PurePosixPath(bucket, \"hazard/hazard.zarr\"))\n",
    "scenario = \"historical\"\n",
    "year = \"1985\"\n",
    "full_path = str(\n",
    "    PurePosixPath(\n",
    "        bucket,\n",
    "        f\"hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_{scenario}_{year}\",\n",
    "    )\n",
    ")"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The Zarr group is located at path `physrisk-hazard-indicators-dev01/hazard/hazard.zarr`.\n",
    "The particular array is located at path `physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985`."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 62,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Contents of 'driectory' physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985:\n",
      "765 files\n",
      "['physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/.zarray', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/.zattrs', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.0.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.0.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.0.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.0.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.1.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.1.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.1.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.1.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.1.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.1.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.1.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.14', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.15', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.16', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.17', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.10.29', 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'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.29', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.3', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.4', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.5', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.6', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.7', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.36.8', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.2', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.3', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.32', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.37', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.38', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.4', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.5', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.6', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.37.7', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.38.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.38.2', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.38.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.38.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.38.31', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.38.37', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.39.29', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.39.30', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.39.31', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.1', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.2', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.3', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.4', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.4.5', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.1', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.2', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.3', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.4', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.5.5', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.2', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.3', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.6.4', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.17', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.29', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.7.30', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.16', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.17', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.29', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.30', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.8.31', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.15', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.16', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.17', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.18', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.19', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.20', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.21', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.22', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.23', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.24', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.25', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.26', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.27', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.28', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.29', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.30', 'physrisk-hazard-indicators-dev01/hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985/0.9.31']\n"
     ]
    }
   ],
   "source": [
    "print(f\"Contents of 'driectory' {full_path}:\")\n",
    "contents = s3.ls(full_path)\n",
    "print(f\"{len(contents)} files\")\n",
    "print(contents)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Note that this comprises files .zarray, .zattrs, and the (non-empty) chunks which have filenames in the format {chunk_z, chunk_y, chunk_x}, e.g. 0.1.21"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 63,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{\n",
      "    \"chunks\": [\n",
      "        5,\n",
      "        1000,\n",
      "        1000\n",
      "    ],\n",
      "    \"compressor\": {\n",
      "        \"blocksize\": 0,\n",
      "        \"clevel\": 5,\n",
      "        \"cname\": \"lz4\",\n",
      "        \"id\": \"blosc\",\n",
      "        \"shuffle\": 1\n",
      "    },\n",
      "    \"dtype\": \"<f4\",\n",
      "    \"fill_value\": \"NaN\",\n",
      "    \"filters\": null,\n",
      "    \"order\": \"C\",\n",
      "    \"shape\": [\n",
      "        5,\n",
      "        39420,\n",
      "        38374\n",
      "    ],\n",
      "    \"zarr_format\": 2\n",
      "}\n"
     ]
    }
   ],
   "source": [
    "with s3.open(full_path + \"/.zarray\") as f:\n",
    "    print(f.read().decode())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The array is (5 returns) x (39420 spatial y coordinates) x (38374 spatial x coordinates). The array is split into chunks where each chunk is 5 x 1000 x 1000."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 64,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{\n",
      "    \"crs\": \"+proj=laea +lat_0=52 +lon_0=10 +x_0=4321000 +y_0=3210000 +ellps=GRS80 +units=m +no_defs=True\",\n",
      "    \"dimensions\": [\n",
      "        \"index\",\n",
      "        \"latitude\",\n",
      "        \"longitude\"\n",
      "    ],\n",
      "    \"index_name\": \"return period (years)\",\n",
      "    \"index_values\": [\n",
      "        10,\n",
      "        30,\n",
      "        100,\n",
      "        300,\n",
      "        1000\n",
      "    ],\n",
      "    \"transform_mat3x3\": [\n",
      "        100.0,\n",
      "        0.0,\n",
      "        2648099.999999999,\n",
      "        0.0,\n",
      "        -99.99999999999999,\n",
      "        5404499.999999997,\n",
      "        0.0,\n",
      "        0.0,\n",
      "        1.0\n",
      "    ]\n",
      "}\n"
     ]
    }
   ],
   "source": [
    "with s3.open(full_path + \"/.zattrs\") as f:\n",
    "    print(f.read().decode())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "This defines the dimensions, gives the CRS for the spatial dimensions (x/longitude and y/latitude), defines the index values for the z dimension (which contains each return period).\n",
    "\n",
    "Transform_mat3x3 provides the affine transform needed to find pixels from latitude and longitude."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 65,
   "metadata": {},
   "outputs": [],
   "source": [
    "# For accessing\n",
    "\n",
    "store = s3fs.S3Map(root=group_path, s3=s3, check=False)\n",
    "root = zarr.group(store=store)\n",
    "z = root[\"inundation/river_tudelft/v2/flood_depth_unprot_historical_1985\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 66,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "pixel values x/y for longitude/latitude are 8982.571352041778/21631.33479974286\n"
     ]
    }
   ],
   "source": [
    "t = z.attrs[\"transform_mat3x3\"]\n",
    "crs = z.attrs[\"crs\"]\n",
    "transform = Affine(t[0], t[1], t[2], t[3], t[4], t[5])\n",
    "lat, lon = (51.7426, -1.2669)\n",
    "transproj = Transformer.from_crs(\"epsg:4326\", crs, always_xy=True)\n",
    "x, y = transproj.transform([lon], [lat])\n",
    "\n",
    "px, py = ~transform * (x[0], y[0])\n",
    "print(f\"pixel values x/y for longitude/latitude are {px}/{py}\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 67,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[2.2507873 2.4166772 2.5981872 2.7464173 2.8810973]\n"
     ]
    }
   ],
   "source": [
    "print(z[:, int(py), int(px)])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 68,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[[8.98257135e+03]\n",
      " [2.16313348e+04]\n",
      " [1.00000000e+00]]\n",
      "[2.2507873 2.4166772 2.5981872 2.7464173 2.8810973]\n"
     ]
    }
   ],
   "source": [
    "# some code to do the same thing but fast for a large number of x and y coordinates\n",
    "\n",
    "coords = np.vstack((x, y, np.ones(len(x))))  # type: ignore\n",
    "inv_trans = ~transform\n",
    "mat = np.array(inv_trans).reshape(3, 3)\n",
    "frac_image_coords = mat @ coords\n",
    "print(frac_image_coords)\n",
    "index_values = z.attrs.get(\"index_values\", [0])\n",
    "image_coords = np.floor(frac_image_coords).astype(int)\n",
    "iy = np.repeat(image_coords[1, :], len(index_values))\n",
    "ix = np.repeat(image_coords[0, :], len(index_values))\n",
    "iz = np.tile(np.arange(z.shape[0]), image_coords.shape[1])\n",
    "data = z.get_coordinate_selection((iz, iy, ix))\n",
    "print(data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 69,
   "metadata": {},
   "outputs": [],
   "source": [
    "# doing the same thing locally\n",
    "\n",
    "test_output_dir = \"/Users/joemoorhouse/Code/hazard/tests/test_output/\"  # this contains a copy of hazard/hazard.zarr/inundation/river_tudelft/v2/flood_depth_unprot_historical_1985\n",
    "local_store = zarr.DirectoryStore(\n",
    "    os.path.join(test_output_dir, \"hazard\", \"hazard.zarr\")\n",
    ")\n",
    "root_local = zarr.group(store=local_store)\n",
    "z_local = root_local[\"inundation/river_tudelft/v2/flood_depth_unprot_historical_1985\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 70,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[2.2507873 2.4166772 2.5981872 2.7464173 2.8810973]\n"
     ]
    }
   ],
   "source": [
    "print(z_local[:, int(py), int(px)])"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "A note on performance. When we request a set of coordinates from Zarr, Zarr works out which chunks it needs to obtain, decompress and which pixels it needs to look up from those chunks. The only non-trivial parts in terms of performance are:\n",
    "1) getting the chunk into memory\n",
    "2) decompressing the chunk\n",
    "\n",
    "For an S3 store, 1 takes most of the time and it is important that the machine doing the decompression and look-up has a fast connection to the bucket (as I write, I am running this on a laptop with a broadband connection in a different continent to the bucket, an example of a slow connection!).\n",
    "\n",
    "S3 is generally 'fast enough' in that requesting order 100,000 coordinates takes order ~10s (depending on clustering of lats/lons) but of course we can get orders of magnitude faster than this, e.g. storing on a solid state hard disk, or distributed memory containing uncompressed tiles.\n",
    "\n",
    "Moreover, Zarr provides a number of stores (we have used only the S3 and local so far) to manage the chunks.\n",
    "https://zarr.readthedocs.io/en/stable/api/storage.html\n"
   ]
  }
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